HL_2D3O_056

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_056 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.1336

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

2D3O|1|0|C|2303
2D3O|1|0|G|2304
2D3O|1|0|C|2305
2D3O|1|0|A|2306
2D3O|1|0|A|2307
2D3O|1|0|A|2308
2D3O|1|0|G|2309
2D3O|1|0|G|2310

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains