HL_2D3O_061

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

2D3O|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_061 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1443

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

2D3O|1|0|U|2507
2D3O|1|0|G|2508
2D3O|1|0|A|2509
2D3O|1|0|A|2510
2D3O|1|0|G|2511
2D3O|1|0|A|2512
2D3O|1|0|A|2513
2D3O|1|0|G|2514

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains