HL_2D3O_066

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

2D3O|1|0|G|2731, 2D3O|1|0|C|2735, 2D3O|1|0|A|2737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2D3O_066 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.4474

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

2D3O|1|0|C|2725
2D3O|1|0|U|2726
2D3O|1|0|G|2727
2D3O|1|0|A|2728
2D3O|1|0|A|2729
2D3O|1|0|A|2730
2D3O|1|0|G|2731
2D3O|1|0|C|2732
2D3O|1|0|A|2733
2D3O|1|0|U|2734
2D3O|1|0|C|2735
2D3O|1|0|U|2736
2D3O|1|0|A|2737
2D3O|1|0|A|2738
2D3O|1|0|G|2739

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains