HL_2D6F_006

3D structure

PDB id

2D6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUCGACUC

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_22280.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

71

Unit IDs

2D6F|1|F|G|953
2D6F|1|F|U|954
2D6F|1|F|U|955
2D6F|1|F|C|956
2D6F|1|F|G|957
2D6F|1|F|A|958
2D6F|1|F|C|959
2D6F|1|F|U|960
2D6F|1|F|C|961

Current chains

Chain F

tRNA

Nearby chains

Chain D

Glutamyl-tRNA(Gln) amidotransferase subunit E