HL_2DEU_004

3D structure

PDB id

2DEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGAGGCCCAG

Length

11 nucleotides

Bulged bases

2DEU|1|D|A|16, 2DEU|1|D|G|17, 2DEU|1|D|G|18, 2DEU|1|D|C|19, 2DEU|1|D|C|20|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2DEU_004 not in the Motif Atlas

Geometric match to HL_5HR6_001

Geometric discrepancy: 0.1462

The information below is about HL_5HR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

2DEU|1|D|U|13
2DEU|1|D|A|14
2DEU|1|D|G|15
2DEU|1|D|A|16
2DEU|1|D|G|17
2DEU|1|D|G|18
2DEU|1|D|C|19
2DEU|1|D|C|20
2DEU|1|D|C|20|||A
2DEU|1|D|A|21
2DEU|1|D|G|22

Current chains

Chain D

tRNA

Nearby chains

Chain A

tRNA-specific 2-thiouridylase mnmA

Chain B

tRNA-specific 2-thiouridylase mnmA