Motif HL_78347.5 Version HL_78347.5 of this group appears in releases 4.0 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1N78_001 | 1N78 | 0.5495 | 4 | C | tRNA | U | 513 | A | 514 | G | 515 | U | 520 | A | 521 | G | 522 | cWW | cWS | ntSH | |
| 2 | HL_2DER_004 | 2DER | 0.2261 | 5 | D | tRNA | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW | |
| 3 | HL_5HR6_001 | 5HR6 | 0.0000 | 5 | C | tRNA | U | 12 | A | 13 | G | 14 | C | 19 | A | 21 | G | 22 | cWW | cWS | tSW | |
| 4 | HL_5HR7_004 | 5HR7 | 0.0685 | 5 | D | tRNA | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW | |
| 5 | HL_6WBR_004 | 6WBR | 0.5830 | 3 | B | RNA (94-MER) | C | 55 | C | 56 | U | 57 | G | 60 | G | 62 | G | 63 | cWW | |||
| 6 | HL_1QU2_002 | 1QU2 | 0.6364 | 3 | T | tRNA | C | 31 | C | 32 | U | 33 | U | 36 | A | 38 | G | 39 | cWW | ncWW | ntSW | |
| 7 | HL_3DIL_004 | 3DIL | 0.7418 | 0 | A | Lysine riboswitch | G | 149 | G | 150 | U | 151 | C | 152 | U | 153 | C | 154 | cWW | ncSW | ||
| 8 | HL_8CRE_194 | 8CRE | 0.6373 | 0 | CM | SSU rRNA | U | 188 | G | 189 | U | 190 | U | 191 | U | 192 | G | 193 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGAGGCCCAG | 3 |
| UAGCGGUUAG | 1 |
| CCUUCGUGG | 1 |
| CCUGAUAAG | 1 |
| GGUCUC | 1 |
| UGUUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAGGCCCA | 3 |
| AGCGGUUA | 1 |
| CUUCGUG | 1 |
| CUGAUAA | 1 |
| GUCU | 1 |
| GUUU | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 |
|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.51 | Max 0.89
Coloring options: