HL_2DR2_005

3D structure

PDB id

2DR2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp)

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUCCAGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2DR2_005 not in the Motif Atlas

Geometric match to HL_2AKE_002

Geometric discrepancy: 0.0676

The information below is about HL_2AKE_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

2DR2|1|B|A|31||||8_666
2DR2|1|B|C|32||||8_666
2DR2|1|B|U|33||||8_666
2DR2|1|B|C|34||||8_666
2DR2|1|B|C|35||||8_666
2DR2|1|B|A|36||||8_666
2DR2|1|B|G|37||||8_666
2DR2|1|B|A|38||||8_666
2DR2|1|B|U|39||||8_666

Current chains

Chain B

transfer RNA-Trp

Nearby chains

Chain A

Tryptophanyl-tRNA synthetase