HL_2DU5_002

3D structure

PDB id

2DU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ('opal complex')

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUUCAGAU

Length

9 nucleotides

Bulged bases

2DU5|1|D|U|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2DU5_002 not in the Motif Atlas

Geometric match to HL_2DU3_002

Geometric discrepancy: 0.289

The information below is about HL_2DU3_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38808.1

Basepair signature

cWW-cWW

Number of instances in this motif group

4

Unit IDs

2DU5|1|D|A|930
2DU5|1|D|C|931
2DU5|1|D|U|932
2DU5|1|D|U|933
2DU5|1|D|C|934
2DU5|1|D|A|935
2DU5|1|D|G|936
2DU5|1|D|A|937
2DU5|1|D|U|938

Current chains

Chain D

tRNA

Nearby chains

Chain A

O-phosphoseryl-tRNA synthetase