HL_2DU6_002

3D structure

PDB id

2DU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAAmber and O-phosphoserine ('amber complex')

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACUCUAGAU

Length

9 nucleotides

Bulged bases

2DU6|1|D|U|932, 2DU6|1|D|C|933, 2DU6|1|D|U|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05361.1

Basepair signature

cWW-cWW-R

Number of instances in this motif group

2

Unit IDs

2DU6|1|D|A|930
2DU6|1|D|C|931
2DU6|1|D|U|932
2DU6|1|D|C|933
2DU6|1|D|U|934
2DU6|1|D|A|935
2DU6|1|D|G|936
2DU6|1|D|A|937
2DU6|1|D|U|938

Current chains

Chain D

tRNA

Nearby chains

Chain A

O-phosphoseryl-tRNA synthetase