HL_2E5L_006

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

2E5L|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2E5L_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1036

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2E5L|1|A|G|259
2E5L|1|A|G|260
2E5L|1|A|U|261
2E5L|1|A|A|262
2E5L|1|A|A|263
2E5L|1|A|U|264
2E5L|1|A|G|265
2E5L|1|A|G|266
2E5L|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20