HL_2E5L_025

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

2E5L|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2E5L_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1271

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

2E5L|1|A|G|1089
2E5L|1|A|U|1090
2E5L|1|A|U|1091
2E5L|1|A|A|1092
2E5L|1|A|A|1093
2E5L|1|A|G|1094
2E5L|1|A|U|1095
2E5L|1|A|C|1096

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain G

30S ribosomal protein S7