HL_2F4V_035

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCUAACGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2F4V_035 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2472

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

2F4V|1|A|G|861
2F4V|1|A|C|862
2F4V|1|A|U|863
2F4V|1|A|A|864
2F4V|1|A|A|865
2F4V|1|A|C|866
2F4V|1|A|G|867
2F4V|1|A|C|868

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain E

30S ribosomal protein S5

Chain H

30S ribosomal protein S8