HL_2FCZ_004

3D structure

PDB id

2FCZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 DIS kissing-loop in complex with ribostamycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.01 Å

Loop

Sequence

GAAGUGCACAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2FCZ_004 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.3583

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

2FCZ|1|D|G|7
2FCZ|1|D|A|8
2FCZ|1|D|A|9
2FCZ|1|D|G|10
2FCZ|1|D|U|11
2FCZ|1|D|G|12
2FCZ|1|D|C|13
2FCZ|1|D|A|14
2FCZ|1|D|C|15
2FCZ|1|D|A|16
2FCZ|1|D|C|17

Current chains

Chain D

HIV-1 DIS RNA

Nearby chains

Chain A

HIV-1 DIS RNA

Chain B

HIV-1 DIS RNA

Chain C

HIV-1 DIS RNA