Motif HL_00911.2 Version HL_00911.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DFE_002 | 9DFE | 0.6568 | 2 | Pseudoknot geometry (H) | 1A | LSU rRNA | C | 87 | U | 90 | A | 92 | G | 93 | C | 94 | G | 94|||A | G | 95 | cWW |
| 2 | HL_4WF9_002 | 4WF9 | 0.6251 | 2 | Pseudoknot geometry | X | LSU rRNA | U | 87 | A | 90 | A | 91 | G | 92 | U | 93 | A | 94 | A | 95 | cWW |
| 3 | HL_7JRR_001 | 7JRR | 0.4927 | 2 | A | RNA (50-MER) | G | 12 | C | 15 | C | 16 | A | 17 | U | 18 | C | 19 | C | 20 | cWW | |
| 4 | HL_7JRR_002 | 7JRR | 0.4934 | 2 | A | RNA (50-MER) | G | 39 | U | 42 | G | 43 | G | 44 | U | 45 | U | 46 | C | 47 | cWW | |
| 5 | HL_5X6B_004 | 5X6B | 0.5259 | 2 | P | tRNA | A | 30 | G | 33 | C | 34 | A | 35 | G | 36 | A | 37 | U | 38 | ncWW | |
| 6 | HL_4QLM_002 | 4QLM | 0.3074 | 3 | Pseudoknot geometry | A | cyclic di-AMP riboswitch | U | 72 | C | 76 | C | 77 | U | 78 | U | 79 | C | 80 | G | 81 | cWW |
| 7 | HL_8GLP_009 | 8GLP | 0.1842 | 3 | Pseudoknot geometry (H) | L5 | LSU rRNA | G | 314 | A | 318 | A | 319 | C | 320 | U | 321 | C | 322 | C | 323 | cWW |
| 8 | HL_9AXU_009 | 9AXU | 0.1121 | 3 | 2 | LSU rRNA | G | 311 | A | 315 | A | 316 | U | 317 | U | 318 | U | 319 | C | 320 | cWW | |
| 9 | HL_8P9A_121 | 8P9A | 0.0000 | 3 | Pseudoknot geometry (H) | AR | LSU rRNA | G | 303 | A | 307 | A | 308 | U | 309 | U | 310 | C | 311 | C | 312 | cWW |
| 10 | HL_8OI5_009 | 8OI5 | 0.0939 | 3 | Pseudoknot geometry (H) | 1 | LSU rRNA | G | 303 | A | 307 | A | 308 | U | 309 | U | 310 | C | 311 | C | 312 | cWW |
| 11 | HL_4ENC_001 | 4ENC | 0.2882 | 3 | Pseudoknot geometry | A | Fluoride riboswitch | G | 5 | A | 9 | G | 10 | G | 11 | C | 12 | C | 13 | C | 14 | cWW |
| 12 | HL_7KGA_003 | 7KGA | 0.7961 | 3 | Pseudoknot geometry | B | Flavivirus DB element | U | 22 | G | 26 | C | 27 | C | 28 | U | 29 | A | 30 | G | 31 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAAUUCC | 2 |
| CGGUAGCGG | 1 |
| UGUAAGUAA | 1 |
| GAACCAUCC | 1 |
| GGAUGGUUC | 1 |
| ACUGCAGAU | 1 |
| UACUCCUUCG | 1 |
| GGUAAACUCC | 1 |
| GGUAAAUUUC | 1 |
| GAUGAGGCCC | 1 |
| UCAAGCCUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAAUUC | 2 |
| GGUAGCG | 1 |
| GUAAGUA | 1 |
| AACCAUC | 1 |
| GAUGGUU | 1 |
| CUGCAGA | 1 |
| ACUCCUUC | 1 |
| GUAAACUC | 1 |
| GUAAAUUU | 1 |
| AUGAGGCC | 1 |
| CAAGCCUA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (4)
- (4)
- Pseudoknot geometry (H) (4)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.47 | Max 0.87
Coloring options: