HL_2FEY_006

3D structure

PDB id

2FEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of stem loop IV of Tetrahymena telomerase RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACACUAUUU

Length

9 nucleotides

Bulged bases

2FEY|6|A|U|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2FEY_006 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3936

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

2FEY|6|A|A|20
2FEY|6|A|C|21
2FEY|6|A|A|22
2FEY|6|A|C|23
2FEY|6|A|U|24
2FEY|6|A|A|25
2FEY|6|A|U|26
2FEY|6|A|U|27
2FEY|6|A|U|28

Current chains

Chain A

stem-loop IV of Tetrahymena telomerase RNA

Nearby chains