2FEY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2FEY_001 | 1/A/20:28 | tRNA D-loop | geometric HL_4V90_032 NA | |
| HL_2FEY_002 | 2/A/20:28 | No text annotation | geometric HL_7MLW_004 NA | |
| HL_2FEY_011 | 3/A/20:28 | No text annotation | ||
| HL_2FEY_004 | 4/A/20:28 | No text annotation | ||
| HL_2FEY_005 | 5/A/20:28 | No text annotation | geometric HL_7MLW_004 NA | |
| HL_2FEY_006 | 6/A/20:28 | tRNA D-loop | geometric HL_1FIR_001 NA | |
| HL_2FEY_007 | 7/A/20:28 | No text annotation | ||
| HL_2FEY_008 | 8/A/20:28 | No text annotation | ||
| HL_2FEY_009 | 9/A/20:28 | No text annotation | ||
| HL_2FEY_010 | 10/A/20:28 | No text annotation | geometric HL_7MLW_004 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2FEY_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2FEY_041 | 1/A/5:8, 1/A/37:39 | No text annotation | ||
| IL_2FEY_002 | 1/A/9:12, 1/A/35:36 | No text annotation | ||
| IL_2FEY_003 | 1/A/14:17, 1/A/31:33 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_2FEY_005 | 2/A/5:9, 2/A/36:39 | No text annotation | ||
| IL_2FEY_006 | 2/A/9:12, 2/A/35:36 | No text annotation | ||
| IL_2FEY_007 | 2/A/14:17, 2/A/31:33 | Isolated non-canonical cWW pair | geometric IL_5T3K_001 IL_01003.5 | |
| IL_2FEY_009 | 3/A/5:9, 3/A/36:39 | No text annotation | ||
| IL_2FEY_010 | 3/A/9:12, 3/A/35:36 | No text annotation | ||
| IL_2FEY_011 | 3/A/14:16, 3/A/32:33 | Multiple bulged bases | geometric IL_6CZR_117 NA | |
| IL_2FEY_013 | 4/A/5:9, 4/A/36:39 | No text annotation | ||
| IL_2FEY_014 | 4/A/9:12, 4/A/35:36 | No text annotation | ||
| IL_2FEY_015 | 4/A/14:16, 4/A/32:33 | Multiple bulged bases | geometric IL_6CZR_117 NA | |
| IL_2FEY_017 | 5/A/5:12, 5/A/35:39 | No text annotation | ||
| IL_2FEY_018 | 5/A/14:17, 5/A/31:33 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.5 | |
| IL_2FEY_020 | 6/A/5:9, 6/A/36:39 | No text annotation | ||
| IL_2FEY_021 | 6/A/9:12, 6/A/35:36 | No text annotation | ||
| IL_2FEY_022 | 6/A/14:16, 6/A/32:33 | Multiple bulged bases | geometric IL_6CZR_117 NA | |
| IL_2FEY_024 | 7/A/5:9, 7/A/36:39 | No text annotation | ||
| IL_2FEY_025 | 7/A/9:12, 7/A/35:36 | No text annotation | ||
| IL_2FEY_042 | 7/A/14:16, 7/A/32:33 | No text annotation | geometric IL_9FN3_003 IL_48076.9 | |
| IL_2FEY_028 | 8/A/5:9, 8/A/36:39 | No text annotation | ||
| IL_2FEY_029 | 8/A/9:12, 8/A/35:36 | No text annotation | geometric IL_4V9F_073 IL_80025.2 | |
| IL_2FEY_030 | 8/A/14:17, 8/A/31:33 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_2FEY_032 | 9/A/5:9, 9/A/36:39 | No text annotation | ||
| IL_2FEY_033 | 9/A/9:12, 9/A/35:36 | No text annotation | geometric IL_5J7L_321 NA | |
| IL_2FEY_035 | 9/A/14:17, 9/A/31:33 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_2FEY_037 | 10/A/5:9, 10/A/36:39 | No text annotation | ||
| IL_2FEY_038 | 10/A/9:12, 10/A/35:36 | No text annotation | ||
| IL_2FEY_039 | 10/A/14:17, 10/A/31:33 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2FEY_001 | No text annotation | ||
| IL_2FEY_004 | No text annotation | ||
| IL_2FEY_008 | Isolated non-canonical cWW pair | ||
| IL_2FEY_012 | No text annotation | ||
| IL_2FEY_016 | Isolated non-canonical cWW pair | ||
| IL_2FEY_019 | Isolated non-canonical cWW pair | ||
| IL_2FEY_023 | Isolated non-canonical cWW pair | ||
| IL_2FEY_026 | Major groove platform with extra cWW | ||
| IL_2FEY_027 | Isolated non-canonical cWW pair | ||
| IL_2FEY_031 | Isolated non-canonical cWW pair | ||
| IL_2FEY_034 | Isolated non-canonical cWW pair | ||
| IL_2FEY_036 | Isolated non-canonical cWW pair | ||
| IL_2FEY_040 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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