HL_2FK6_003

3D structure

PDB id

2FK6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of RNAse Z/tRNA(Thr) complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGCAGGUAG

Length

10 nucleotides

Bulged bases

2FK6|1|R|C|16||||2_756, 2FK6|1|R|A|17||||2_756, 2FK6|1|R|G|18||||2_756, 2FK6|1|R|G|19||||2_756, 2FK6|1|R|U|20||||2_756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2FK6_003 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.2365

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

2FK6|1|R|C|13||||2_756
2FK6|1|R|A|14||||2_756
2FK6|1|R|G|15||||2_756
2FK6|1|R|C|16||||2_756
2FK6|1|R|A|17||||2_756
2FK6|1|R|G|18||||2_756
2FK6|1|R|G|19||||2_756
2FK6|1|R|U|20||||2_756
2FK6|1|R|A|21||||2_756
2FK6|1|R|G|22||||2_756

Current chains

Chain R

TRNA(THR)

Nearby chains

Chain A

RIBONUCLEASE Z