HL_2HHH_034

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCCGCGAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2HHH_034 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3321

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

2HHH|1|A|C|1007
2HHH|1|A|C|1008
2HHH|1|A|C|1009
2HHH|1|A|G|1010
2HHH|1|A|C|1011
2HHH|1|A|G|1012
2HHH|1|A|A|1013
2HHH|1|A|G|1014
2HHH|1|A|G|1015
2HHH|1|A|G|1016

Current chains

Chain A

16S ribosomal RNA

Nearby chains