HL_2HOJ_001
3D structure
- PDB id
- 2HOJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CCUCGUGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25857.1
- Basepair signature
- Not available
- Number of instances in this motif group
- 2
Unit IDs
2HOJ|1|A|C|23
2HOJ|1|A|C|24
2HOJ|1|A|U|25
2HOJ|1|A|C|30
2HOJ|1|A|G|31
2HOJ|1|A|U|32
2HOJ|1|A|G|33
2HOJ|1|A|A|34
2HOJ|1|A|A|35
2HOJ|1|A|G|36
Current chains
- Chain A
- thi-box riboswitch
Nearby chains
No other chains within 10ÅColoring options: