HL_2J28_003

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_003 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3845

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

2J28|1|A|G|86
2J28|1|A|U|87
2J28|1|A|C|88
2J28|1|A|U|89
2J28|1|A|C|90

Current chains

Chain A

5S RIBOSOMAL RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S RIBOSOMAL PROTEIN L16