2J28 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2J28_001 | No text annotation | ||
| HL_2J28_002 | No text annotation | ||
| HL_2J28_003 | No text annotation | ||
| HL_2J28_004 | No text annotation | ||
| HL_2J28_005 | No text annotation | ||
| HL_2J28_006 | No text annotation | ||
| HL_2J28_007 | UNCG | ||
| HL_2J28_008 | No text annotation | ||
| HL_2J28_009 | No text annotation | ||
| HL_2J28_010 | No text annotation | ||
| HL_2J28_011 | No text annotation | ||
| HL_2J28_012 | T-loop with 2 stacked bulged bases | ||
| HL_2J28_013 | No text annotation | ||
| HL_2J28_014 | T-loop with unstacked turn | ||
| HL_2J28_015 | No text annotation | ||
| HL_2J28_016 | Pseudoknot geometry | ||
| HL_2J28_017 | GNRA | ||
| HL_2J28_018 | GNRA | ||
| HL_2J28_019 | No text annotation | ||
| HL_2J28_020 | T-loop with 2 stacked bulged bases | ||
| HL_2J28_021 | No text annotation | ||
| HL_2J28_022 | GNRA | ||
| HL_2J28_023 | GNRA | ||
| HL_2J28_024 | GNRA wlth tandem sheared | ||
| HL_2J28_025 | No text annotation | ||
| HL_2J28_026 | UNCG variation | ||
| HL_2J28_027 | No text annotation | ||
| HL_2J28_028 | No text annotation | ||
| HL_2J28_029 | GNRA | ||
| HL_2J28_030 | No text annotation | ||
| HL_2J28_031 | No text annotation | ||
| HL_2J28_032 | GNRA wlth tandem sheared | ||
| HL_2J28_033 | No text annotation | ||
| HL_2J28_034 | GNRA | ||
| HL_2J28_035 | T-loop with 2 stacked bulged bases | ||
| HL_2J28_036 | Pseudoknot geometry with 3' bulge | ||
| HL_2J28_037 | GNRA | ||
| HL_2J28_038 | No text annotation | ||
| HL_2J28_039 | No text annotation | ||
| HL_2J28_040 | Pseudoknot geometry with 3' bulge | ||
| HL_2J28_041 | UNCG | ||
| HL_2J28_042 | No text annotation | ||
| HL_2J28_043 | No text annotation | ||
| HL_2J28_044 | GNRA | ||
| HL_2J28_045 | UNCG | ||
| HL_2J28_046 | No text annotation | ||
| HL_2J28_047 | No text annotation | ||
| HL_2J28_048 | No text annotation | ||
| HL_2J28_049 | GNRA related | ||
| HL_2J28_050 | GNRA variation | ||
| HL_2J28_051 | No text annotation | ||
| HL_2J28_052 | No text annotation | ||
| HL_2J28_053 | No text annotation | ||
| HL_2J28_054 | No text annotation | ||
| HL_2J28_055 | No text annotation | ||
| HL_2J28_056 | No text annotation | ||
| HL_2J28_057 | No text annotation | ||
| HL_2J28_058 | No text annotation | ||
| HL_2J28_073 | No text annotation | ||
| HL_2J28_059 | Pseudoknot geometry | ||
| HL_2J28_060 | GNRA | ||
| HL_2J28_061 | GNRA | ||
| HL_2J28_062 | No text annotation | ||
| HL_2J28_063 | No text annotation | ||
| HL_2J28_064 | GNRA variation | ||
| HL_2J28_065 | No text annotation | ||
| HL_2J28_066 | GNRA | ||
| HL_2J28_067 | GNRA | ||
| HL_2J28_068 | Ribsomal LSU H95 | ||
| HL_2J28_069 | No text annotation | ||
| HL_2J28_070 | Externally structured | ||
| HL_2J28_071 | No text annotation | ||
| HL_2J28_072 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2J28_001 | No text annotation | ||
| IL_2J28_002 | Single bulged A | ||
| IL_2J28_003 | No text annotation | ||
| IL_2J28_004 | tSH-tHW-tHS-cWW | ||
| IL_2J28_005 | Major groove intercalation | ||
| IL_2J28_006 | No text annotation | ||
| IL_2J28_007 | No text annotation | ||
| IL_2J28_008 | Symmetric double minor groove platform | ||
| IL_2J28_009 | Bacterial 5S Loop E | ||
| IL_2J28_010 | Triple sheared with non-canonical cWW | ||
| IL_2J28_011 | Single bulged A | ||
| IL_2J28_012 | Minor groove platform | ||
| IL_2J28_013 | No text annotation | ||
| IL_2J28_014 | Single stack bend | ||
| IL_2J28_015 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_2J28_016 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_2J28_017 | No text annotation | ||
| IL_2J28_018 | No text annotation | ||
| IL_2J28_019 | No text annotation | ||
| IL_2J28_020 | No text annotation | ||
| IL_2J28_021 | Double sheared | ||
| IL_2J28_022 | Isolated non-canonical cWW pair | ||
| IL_2J28_023 | AAA cross-strand stack | ||
| IL_2J28_024 | Isolated non-canonical cWW pair | ||
| IL_2J28_025 | tHW-tHW cross-strand stack | ||
| IL_2J28_026 | Single bulged A | ||
| IL_2J28_027 | Single bulged G | ||
| IL_2J28_028 | Triple sheared | ||
| IL_2J28_029 | Major groove platform | ||
| IL_2J28_030 | Multiple bulged bases | ||
| IL_2J28_031 | Single stack bend | ||
| IL_2J28_032 | No text annotation | ||
| IL_2J28_033 | Single stack bend | ||
| IL_2J28_034 | Isolated non-canonical cWW pair | ||
| IL_2J28_035 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_2J28_036 | Minor groove platform related | ||
| IL_2J28_037 | C-loop with bulged stacked A's | ||
| IL_2J28_038 | Isolated non-canonical cWW pair | ||
| IL_2J28_039 | Single bulged C | ||
| IL_2J28_040 | UAA/GAN | ||
| IL_2J28_041 | SSU/LSU pseudoknot | ||
| IL_2J28_042 | Single bulged U | ||
| IL_2J28_043 | Kink-turn related | ||
| IL_2J28_113 | No text annotation | ||
| IL_2J28_044 | Isolated non-canonical cWW pair | ||
| IL_2J28_045 | Tandem non-canonical cWW pairs | ||
| IL_2J28_046 | Kink-turn | ||
| IL_2J28_047 | No text annotation | ||
| IL_2J28_048 | Major groove platform | ||
| IL_2J28_049 | Isolated cWS basepair | ||
| IL_2J28_050 | No text annotation | ||
| IL_2J28_051 | Kink-turn | ||
| IL_2J28_052 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_2J28_053 | Major groove platform; stack outside cWW | ||
| IL_2J28_054 | C-loop | ||
| IL_2J28_055 | UAA/GAN | ||
| IL_2J28_056 | tSH-tHW-tHS | ||
| IL_2J28_057 | No text annotation | ||
| IL_2J28_058 | UAA/GAN | ||
| IL_2J28_059 | Tandem non-canonical cWW pairs | ||
| IL_2J28_060 | No text annotation | ||
| IL_2J28_061 | No text annotation | ||
| IL_2J28_062 | tSH-tHW-tHS | ||
| IL_2J28_063 | No text annotation | ||
| IL_2J28_064 | Single bulged A | ||
| IL_2J28_065 | UAA/GAN variation | ||
| IL_2J28_066 | No text annotation | ||
| IL_2J28_067 | Isolated tWW turn | ||
| IL_2J28_068 | Major groove platform; stack outside cWW | ||
| IL_2J28_114 | No text annotation | ||
| IL_2J28_069 | Intercalated tWH | ||
| IL_2J28_070 | tSH-tSH-tHH-tHS | ||
| IL_2J28_071 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_2J28_072 | Triple sheared | ||
| IL_2J28_073 | Single bulged C | ||
| IL_2J28_074 | Single bulged A | ||
| IL_2J28_075 | Kink-turn related | ||
| IL_2J28_076 | Minor groove platform, major groove intercalation | ||
| IL_2J28_077 | Major groove intercalation | ||
| IL_2J28_078 | Minor groove platform | ||
| IL_2J28_115 | No text annotation | ||
| IL_2J28_079 | UAA/GAN related | ||
| IL_2J28_080 | Bulged stacked bases | ||
| IL_2J28_081 | No text annotation | ||
| IL_2J28_082 | Major groove platform | ||
| IL_2J28_083 | No text annotation | ||
| IL_2J28_084 | Single bulged U | ||
| IL_2J28_085 | Minor groove platform | ||
| IL_2J28_086 | Isolated tHS basepair with bulges | ||
| IL_2J28_087 | Isolated non-canonical cWW pair | ||
| IL_2J28_088 | Stack and bulge | ||
| IL_2J28_089 | No text annotation | ||
| IL_2J28_090 | Single bulged U | ||
| IL_2J28_091 | Double sheared | ||
| IL_2J28_092 | No text annotation | ||
| IL_2J28_093 | Single stack bend | ||
| IL_2J28_094 | Major groove platform | ||
| IL_2J28_095 | Major groove platform | ||
| IL_2J28_096 | Major groove minor groove platform with extra cWW | ||
| IL_2J28_097 | Double sheared with non-canonical cWW | ||
| IL_2J28_098 | Major groove platform | ||
| IL_2J28_099 | Isolated non-canonical cWW with bulges | ||
| IL_2J28_100 | No text annotation | ||
| IL_2J28_101 | Major groove platform with intercalation | ||
| IL_2J28_102 | Single bulged A | ||
| IL_2J28_103 | tSH-tHS-tHW | ||
| IL_2J28_104 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_2J28_105 | C-loop | ||
| IL_2J28_106 | UAA/GAN related, with intercalation | ||
| IL_2J28_107 | Multiple bulged bases | ||
| IL_2J28_108 | UAA/GAN with extra cWW | ||
| IL_2J28_109 | No text annotation | ||
| IL_2J28_110 | Major groove intercalation | ||
| IL_2J28_111 | Multiple bulged bases with non-canonical cWW | ||
| IL_2J28_112 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_2J28_001 | No text annotation | ||
| J3_2J28_011 | No text annotation | ||
| J3_2J28_014 | No text annotation | ||
| J3_2J28_015 | No text annotation | ||
| J3_2J28_012 | No text annotation | ||
| J3_2J28_002 | No text annotation | ||
| J3_2J28_003 | No text annotation | ||
| J3_2J28_004 | No text annotation | ||
| J3_2J28_005 | No text annotation | ||
| J3_2J28_006 | No text annotation | ||
| J3_2J28_016 | No text annotation | ||
| J3_2J28_017 | No text annotation | ||
| J3_2J28_007 | Kink-turn 3-way junction | ||
| J3_2J28_018 | No text annotation | ||
| J3_2J28_008 | No text annotation | ||
| J3_2J28_009 | No text annotation | ||
| J3_2J28_013 | No text annotation | ||
| J3_2J28_010 | No text annotation | ||
| J4_2J28_001 | No text annotation | ||
| J4_2J28_002 | No text annotation | ||
| J4_2J28_003 | No text annotation | ||
| J4_2J28_004 | No text annotation | ||
| J4_2J28_005 | No text annotation | ||
| J4_2J28_006 | No text annotation | ||
| J4_2J28_007 | No text annotation | ||
| J4_2J28_008 | No text annotation | ||
| J4_2J28_009 | No text annotation | ||
| J4_2J28_010 | No text annotation | ||
| J4_2J28_011 | No text annotation | ||
| J5_2J28_001 | No text annotation | ||
| J5_2J28_002 | No text annotation | ||
| J5_2J28_003 | No text annotation | ||
| J5_2J28_004 | No text annotation | ||
| J5_2J28_005 | No text annotation | ||
| J5_2J28_006 | No text annotation | ||
| J6_2J28_001 | No text annotation | ||
| J6_2J28_002 | No text annotation | ||
| J7_2J28_001 | No text annotation | ||
| J7_2J28_002 | No text annotation |
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