HL_2J28_007

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

2J28|1|B|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_007 not in the Motif Atlas

Geometric match to HL_7MLW_002

Geometric discrepancy: 0.3734

The information below is about HL_7MLW_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

2J28|1|B|U|137
2J28|1|B|U|138
2J28|1|B|U|139
2J28|1|B|C|140
2J28|1|B|G|141
2J28|1|B|A|142

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain T

50S RIBOSOMAL PROTEIN L23