HL_2J28_012
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUGGAAAG
- Length
- 8 nucleotides
- Bulged bases
- 2J28|1|B|A|311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2J28_012 not in the Motif Atlas
- Homologous match to HL_5J7L_142
- Geometric discrepancy: 0.1302
- The information below is about HL_5J7L_142
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_01609.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
2J28|1|B|C|305
2J28|1|B|U|306
2J28|1|B|G|307
2J28|1|B|G|308
2J28|1|B|A|309
2J28|1|B|A|310
2J28|1|B|A|311
2J28|1|B|G|312
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain E
- 50S RIBOSOMAL PROTEIN L4
- Chain U
- 50S RIBOSOMAL PROTEIN L24
Coloring options: