HL_2J28_016

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

2J28|1|B|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_016 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0905

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

2J28|1|B|G|410
2J28|1|B|G|411
2J28|1|B|A|412
2J28|1|B|C|413
2J28|1|B|C|414
2J28|1|B|A|415
2J28|1|B|U|416
2J28|1|B|C|417

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains