HL_2J28_038

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

2J28|1|B|U|1396, 2J28|1|B|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_038 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1154

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2J28|1|B|G|1389
2J28|1|B|U|1390
2J28|1|B|U|1391
2J28|1|B|A|1392
2J28|1|B|A|1393
2J28|1|B|U|1394
2J28|1|B|A|1395
2J28|1|B|U|1396
2J28|1|B|U|1397
2J28|1|B|C|1398

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 9

SIGNAL RECOGNITION PARTICLE 54

Chain T

50S RIBOSOMAL PROTEIN L23