HL_2J28_041

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_041 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.3859

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

2J28|1|B|C|1533
2J28|1|B|U|1534
2J28|1|B|A|1535
2J28|1|B|C|1536
2J28|1|B|G|1537
2J28|1|B|G|1538

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 7

SIGNAL SEQUENCE

Chain 9

SIGNAL RECOGNITION PARTICLE 54