HL_2JL5_032

3D structure

PDB id

2JL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

2JL5|1|V|C|17, 2JL5|1|V|G|18, 2JL5|1|V|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL5_032 not in the Motif Atlas

Geometric match to HL_7LYF_001

Geometric discrepancy: 0.2188

The information below is about HL_7LYF_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

2JL5|1|V|C|13
2JL5|1|V|A|14
2JL5|1|V|G|15
2JL5|1|V|U|16
2JL5|1|V|C|17
2JL5|1|V|G|18
2JL5|1|V|G|19
2JL5|1|V|U|20
2JL5|1|V|A|21
2JL5|1|V|G|22

Current chains

Chain V

E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)

Nearby chains