3D structure

PDB id
7LYF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CAGUCGGUAG
Length
10 nucleotides
Bulged bases
7LYF|1|A|U|16, 7LYF|1|A|C|17, 7LYF|1|A|G|18, 7LYF|1|A|G|19, 7LYF|1|A|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25462.3
Basepair signature
cWW-cWS
Number of instances in this motif group
23

Unit IDs

7LYF|1|A|C|13
7LYF|1|A|A|14
7LYF|1|A|G|15
7LYF|1|A|U|16
7LYF|1|A|C|17
7LYF|1|A|G|18
7LYF|1|A|G|19
7LYF|1|A|U|20
7LYF|1|A|A|21
7LYF|1|A|G|22

Current chains

Chain A
RNA promoter stem-loop A fused with tRNA

Nearby chains

No other chains within 10Å

Coloring options:

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