HL_7LYF_001

3D structure

PDB id

7LYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

7LYF|1|A|U|16, 7LYF|1|A|C|17, 7LYF|1|A|G|18, 7LYF|1|A|G|19, 7LYF|1|A|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7LYF|1|A|C|13
7LYF|1|A|A|14
7LYF|1|A|G|15
7LYF|1|A|U|16
7LYF|1|A|C|17
7LYF|1|A|G|18
7LYF|1|A|G|19
7LYF|1|A|U|20
7LYF|1|A|A|21
7LYF|1|A|G|22

Current chains

Chain A

RNA promoter stem-loop A fused with tRNA

Nearby chains