HL_2JL5_033
3D structure
- PDB id
- 2JL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2JL5_033 not in the Motif Atlas
- Geometric match to HL_4V90_033
- Geometric discrepancy: 0.1396
- The information below is about HL_4V90_033
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
2JL5|1|V|A|31
2JL5|1|V|U|32
2JL5|1|V|U|33
2JL5|1|V|G|34
2JL5|1|V|A|35
2JL5|1|V|A|36
2JL5|1|V|A|37
2JL5|1|V|A|38
2JL5|1|V|U|39
Current chains
- Chain V
- E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain W
- Transfer RNA; tRNA
- Chain X
- MRNA
- Chain Y
- PEPTIDE CHAIN RELEASE FACTOR 2
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