HL_2JL6_027

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGGGGCGCCUACC

Length

13 nucleotides

Bulged bases

2JL6|1|A|C|884, 2JL6|1|A|C|897

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_027 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1647

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

2JL6|1|A|G|879
2JL6|1|A|G|880
2JL6|1|A|G|881
2JL6|1|A|G|882
2JL6|1|A|G|883
2JL6|1|A|C|884
2JL6|1|A|G|892
2JL6|1|A|C|893
2JL6|1|A|C|894
2JL6|1|A|U|895
2JL6|1|A|A|896
2JL6|1|A|C|897
2JL6|1|A|C|898

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L16

Chain Z

50S RIBOSOMAL PROTEIN L25