HL_2JL6_035

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

2JL6|1|A|G|1325, 2JL6|1|A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_035 not in the Motif Atlas

Geometric match to HL_4WF9_033

Geometric discrepancy: 0.0915

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

2JL6|1|A|G|1324
2JL6|1|A|G|1325
2JL6|1|A|U|1326
2JL6|1|A|C|1327
2JL6|1|A|G|1328
2JL6|1|A|U|1329
2JL6|1|A|C|1330

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L17

Chain W

50S RIBOSOMAL PROTEIN L22