HL_2JL6_037

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

2JL6|1|A|U|1396, 2JL6|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_037 not in the Motif Atlas

Geometric match to HL_7RQB_036

Geometric discrepancy: 0.091

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

2JL6|1|A|G|1389
2JL6|1|A|U|1390
2JL6|1|A|U|1391
2JL6|1|A|A|1392
2JL6|1|A|A|1393
2JL6|1|A|U|1394
2JL6|1|A|A|1395
2JL6|1|A|U|1396
2JL6|1|A|U|1397
2JL6|1|A|C|1398

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain X

50S RIBOSOMAL PROTEIN L23