HL_2JL6_038

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

2JL6|1|A|U|1453, 2JL6|1|A|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_038 not in the Motif Atlas

Geometric match to HL_8C3A_203

Geometric discrepancy: 0.2834

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

2JL6|1|A|C|1450|||A
2JL6|1|A|C|1451
2JL6|1|A|A|1452
2JL6|1|A|U|1453
2JL6|1|A|G|1455
2JL6|1|A|G|1456
2JL6|1|A|A|1457
2JL6|1|A|C|1458
2JL6|1|A|G|1459
2JL6|1|A|A|1460
2JL6|1|A|G|1461

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L17