HL_2JL6_045

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUGAUGAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_045 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2593

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

2JL6|1|A|G|1719
2JL6|1|A|U|1720
2JL6|1|A|G|1721
2JL6|1|A|A|1722
2JL6|1|A|U|1739
2JL6|1|A|G|1740
2JL6|1|A|A|1741
2JL6|1|A|G|1742
2JL6|1|A|C|1743

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains