HL_2JL8_031

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL8_031 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3485

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

2JL8|1|A|G|1091
2JL8|1|A|C|1092
2JL8|1|A|G|1093
2JL8|1|A|U|1094
2JL8|1|A|A|1095
2JL8|1|A|A|1096
2JL8|1|A|U|1097
2JL8|1|A|A|1098
2JL8|1|A|G|1099
2JL8|1|A|C|1100

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 9

50S RIBOSOMAL PROTEIN L36

Chain H

50S RIBOSOMAL PROTEIN L6

Chain K

50S RIBOSOMAL PROTEIN L11