HL_2JL8_063

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

2JL8|1|A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL8_063 not in the Motif Atlas

Geometric match to HL_7RQB_061

Geometric discrepancy: 0.1037

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

2JL8|1|A|U|2528
2JL8|1|A|G|2529
2JL8|1|A|A|2530
2JL8|1|A|A|2531
2JL8|1|A|G|2532
2JL8|1|A|A|2533
2JL8|1|A|A|2534
2JL8|1|A|G|2535

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 9

50S RIBOSOMAL PROTEIN L36

Chain H

50S RIBOSOMAL PROTEIN L6