HL_2JL8_064

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL8_064 not in the Motif Atlas

Geometric match to HL_4WF9_058

Geometric discrepancy: 0.1082

The information below is about HL_4WF9_058

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

2JL8|1|A|C|2551
2JL8|1|A|U|2552
2JL8|1|A|G|2553
2JL8|1|A|U|2554
2JL8|1|A|U|2555
2JL8|1|A|C|2556
2JL8|1|A|G|2557

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains