HL_2JQ7_005

3D structure

PDB id

2JQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton binding to the ribosomal L11-RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

2JQ7|3|B|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JQ7_005 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3438

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2JQ7|3|B|C|1064
2JQ7|3|B|U|1065
2JQ7|3|B|U|1066
2JQ7|3|B|A|1067
2JQ7|3|B|G|1068
2JQ7|3|B|A|1069
2JQ7|3|B|A|1070
2JQ7|3|B|G|1071
2JQ7|3|B|C|1072
2JQ7|3|B|A|1073
2JQ7|3|B|G|1074

Current chains

Chain B

RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11

Chain C

THIOSTREPTON