2JQ7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2JQ7_001 | 1/B/1064:1074 | No text annotation | geometric HL_5J7L_161 NA | |
| HL_2JQ7_002 | 1/B/1092:1099 | GNRA with tandem sheared | geometric HL_5J7L_154 NA | |
| HL_2JQ7_021 | 2/B/1065:1073 | No text annotation | ||
| HL_2JQ7_004 | 2/B/1092:1099 | GNRA with tandem sheared | geometric HL_4V9F_043 HL_98423.4 | |
| HL_2JQ7_005 | 3/B/1064:1074 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_2JQ7_006 | 3/B/1092:1099 | No text annotation | geometric HL_4PQV_003 HL_61768.2 | |
| HL_2JQ7_007 | 4/B/1064:1074 | No text annotation | geometric HL_5J7L_161 NA | |
| HL_2JQ7_008 | 4/B/1092:1099 | GNRA with extra near cWW | geometric HL_5J7L_012 NA | |
| HL_2JQ7_009 | 5/B/1064:1074 | No text annotation | ||
| HL_2JQ7_010 | 5/B/1092:1099 | GNRA with tandem sheared | geometric HL_4V9F_043 HL_98423.4 | |
| HL_2JQ7_011 | 6/B/1064:1074 | No text annotation | geometric HL_5AMQ_001 HL_89167.3 | |
| HL_2JQ7_012 | 6/B/1092:1099 | No text annotation | geometric HL_3IGI_004 HL_37569.4 | |
| HL_2JQ7_013 | 7/B/1064:1074 | No text annotation | ||
| HL_2JQ7_014 | 7/B/1092:1099 | GNRA with tandem sheared | geometric HL_5D8H_002 HL_98423.4 | |
| HL_2JQ7_015 | 8/B/1064:1074 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_2JQ7_016 | 8/B/1092:1099 | No text annotation | geometric HL_3IGI_004 HL_37569.4 | |
| HL_2JQ7_017 | 9/B/1064:1074 | No text annotation | ||
| HL_2JQ7_018 | 9/B/1092:1099 | GNRA with tandem sheared | geometric HL_3HHN_010 HL_98423.4 | |
| HL_2JQ7_019 | 10/B/1064:1074 | No text annotation | homologous HL_5J7L_161 NA | |
| HL_2JQ7_020 | 10/B/1092:1099 | GNRA with tandem sheared | homologous HL_6PRV_002 HL_98423.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2JQ7_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2JQ7_001 | 1/B/1059:1062, 1/B/1076:1079 | No text annotation | geometric IL_5D8H_002 IL_28482.1 | |
| IL_2JQ7_002 | 1/B/1087:1091, 1/B/1100:1102 | Major groove platform with extra cWW | geometric IL_5TBW_056 NA | |
| IL_2JQ7_004 | 2/B/1059:1062, 2/B/1076:1079 | No text annotation | ||
| IL_2JQ7_005 | 2/B/1087:1091, 2/B/1100:1102 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_2JQ7_006 | 3/B/1059:1062, 3/B/1076:1079 | No text annotation | ||
| IL_2JQ7_007 | 3/B/1087:1091, 3/B/1100:1102 | Major groove platform with extra cWW | geometric IL_5TBW_056 NA | |
| IL_2JQ7_008 | 4/B/1059:1062, 4/B/1076:1079 | No text annotation | geometric IL_4V9F_110 IL_28482.1 | |
| IL_2JQ7_009 | 4/B/1087:1091, 4/B/1100:1102 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_2JQ7_010 | 5/B/1059:1062, 5/B/1076:1079 | No text annotation | ||
| IL_2JQ7_011 | 5/B/1087:1091, 5/B/1100:1102 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_2JQ7_012 | 6/B/1059:1062, 6/B/1076:1079 | No text annotation | geometric IL_5D8H_002 IL_28482.1 | |
| IL_2JQ7_013 | 6/B/1087:1091, 6/B/1100:1102 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_2JQ7_014 | 7/B/1059:1062, 7/B/1076:1079 | No text annotation | ||
| IL_2JQ7_015 | 7/B/1087:1091, 7/B/1100:1102 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_2JQ7_016 | 8/B/1059:1062, 8/B/1076:1079 | No text annotation | geometric IL_4V9F_110 IL_28482.1 | |
| IL_2JQ7_017 | 8/B/1087:1091, 8/B/1100:1102 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_2JQ7_018 | 9/B/1059:1062, 9/B/1076:1079 | No text annotation | geometric IL_6PRV_001 IL_28482.1 | |
| IL_2JQ7_019 | 9/B/1087:1091, 9/B/1100:1102 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_2JQ7_020 | 10/B/1059:1062, 10/B/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_28482.1 | |
| IL_2JQ7_021 | 10/B/1087:1091, 10/B/1100:1102 | No text annotation | homologous IL_7RQB_044 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2JQ7_003 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2JQ7_001 | 1/B/1055:1058, 1/B/1080:1087, 1/B/1102:1104 | No text annotation | ||
| J3_2JQ7_002 | 2/B/1055:1058, 2/B/1080:1087, 2/B/1102:1104 | No text annotation | ||
| J3_2JQ7_003 | 3/B/1055:1057, 3/B/1081:1087, 3/B/1102:1104 | No text annotation | geometric J3_5TBW_007 NA | |
| J3_2JQ7_011 | 4/B/1055:1057, 4/B/1081:1087, 4/B/1102:1104 | No text annotation | geometric J3_6PRV_001 J3_37832.1 | |
| J3_2JQ7_005 | 5/B/1055:1057, 5/B/1081:1087, 5/B/1102:1104 | No text annotation | geometric J3_6PRV_001 J3_37832.1 | |
| J3_2JQ7_006 | 6/B/1055:1057, 6/B/1081:1087, 6/B/1102:1104 | No text annotation | geometric J3_5D8H_001 J3_37832.1 | |
| J3_2JQ7_007 | 7/B/1055:1057, 7/B/1081:1087, 7/B/1102:1104 | No text annotation | geometric J3_5D8H_001 J3_37832.1 | |
| J3_2JQ7_008 | 8/B/1055:1057, 8/B/1081:1087, 8/B/1102:1104 | No text annotation | geometric J3_5D8H_001 J3_37832.1 | |
| J3_2JQ7_009 | 9/B/1055:1057, 9/B/1081:1087, 9/B/1102:1104 | No text annotation | geometric J3_1MMS_001 NA | |
| J3_2JQ7_012 | 10/B/1055:1057, 10/B/1081:1087, 10/B/1102:1104 | No text annotation | geometric J3_6PRV_001 J3_37832.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_2JQ7_004 | No text annotation | ||
| J3_2JQ7_010 | No text annotation |
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