HL_2JQ7_016

3D structure

PDB id

2JQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton binding to the ribosomal L11-RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JQ7_016 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3362

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

2JQ7|8|B|C|1092
2JQ7|8|B|G|1093
2JQ7|8|B|U|1094
2JQ7|8|B|A|1095
2JQ7|8|B|A|1096
2JQ7|8|B|C|1097
2JQ7|8|B|A|1098
2JQ7|8|B|G|1099

Current chains

Chain B

RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11

Chain C

THIOSTREPTON