HL_2JSG_005

3D structure

PDB id

2JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR solution structure of the anticodon of E.coli TRNA-VAL3 with 1 modification (M6A37)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCUUAC(6MZ)AG

Length

9 nucleotides

Bulged bases

2JSG|5|A|U|34

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JSG_005 not in the Motif Atlas

Geometric match to HL_8VTW_056

Geometric discrepancy: 0.3048

The information below is about HL_8VTW_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

2JSG|5|A|C|31
2JSG|5|A|C|32
2JSG|5|A|U|33
2JSG|5|A|U|34
2JSG|5|A|A|35
2JSG|5|A|C|36
2JSG|5|A|6MZ|37
2JSG|5|A|A|38
2JSG|5|A|G|39

Current chains

Chain A

5'-R(*CP*CP*UP*CP*CP*CP*UP*UP*AP*CP*(6MZ)P*AP*GP*GP*AP*GP*G)-3'

Nearby chains