Motif HL_82182.2 Version HL_82182.2 of this group appears in releases 3.90 to 3.90

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7	3-6	3-7	5-6
1	HL_2BH2_002	2BH2	0.5599	1		D	23S RIBOSOMAL RNA 1932-1968	G	1949	G	1950	U	1951	A	1952	G	1954	U	1955	U	1956	C	1957	cWW				ncSH
2	HL_6CZR_077	6CZR	0.1878	1	GNRA related	1a	SSU rRNA	G	255	G	256	U	257	A	258	A	259	U	260	G	261	C	263	cWW
3	HL_4V88_193	4V88	0.0000	1	GNRA related	A6	SSU rRNA	G	330	A	331	U	332	A	333	G	334	U	335	G	336	C	338	cWW
4	HL_8C3A_199	8C3A	0.0733	1	GNRA related	CM	SSU rRNA	G	328	A	329	U	330	A	331	G	332	U	333	G	334	C	336	cWW
5	HL_5J7L_006	5J7L	0.1913	1	GNRA related	AA	SSU rRNA	G	259	G	260	U	261	A	262	A	263	C	264	G	265	C	267	cWW
6	HL_4LFB_006	4LFB	0.1573	1	GNRA related	A	SSU rRNA	G	259	G	260	U	261	A	262	A	263	U	264	G	265	C	267	cWW
7	HL_4R4V_003	4R4V	0.3578	1	T-loop related	A	VS ribozyme RNA	G	689	U	690	U	691	G	692	A	693	C	694	A	696	C	697	cWW
8	HL_5L4O_002	5L4O	0.3650	1	tRNA anticodon loop	A	tRNA	G	31	OMC	32	U	33	C	34	A	35	U	36	A	38	C	39	cWW	cWW
9	HL_1U9S_003	1U9S	0.4331	1		A	RIBONUCLEASE P	G	181	G	182	U	183	A	184	A	185	G	186	A	187	C	189	cWW
10	HL_3CUL_003	3CUL	0.5371	1	T-loop related	C	RNA (92-MER)	G	69	U	70	U	71	C	72	G	73	A	74	U	76	C	77	cWW	cwW
11	HL_4WF9_039	4WF9	0.5883	1	GNRA with extra cWW	X	LSU rRNA	A	1673	U	1674	G	1675	A	1676	G	1677	A	1679	U	1680	U	1681	cWW	cwW	ntSH
12	HL_4V87_253	4V87	0.6754	0	GNRA with near cWW	BB	tRNA	C	48	C	49	A	50	A	51	U	52	A	53	G	54	G	55	ncWW
13	HL_3RG5_006	3RG5	0.5003	1	tRNA anticodon loop	B	Selenocysteine transfer RNA	G	31	C	32	U	33	C	35	A	36	A	37	A	38	C	39	cWW	cWW
14	HL_7QR8_003	7QR8	0.5504	0	GNRA with extra tWH	A	tracrRNA	U	71	U	72	G	73	A	74	A	75	A	76	A	77	A	78	cWW		ntSH
15	HL_7A0S_056	7A0S	0.5235	0	GNRA with extra cWW	X	LSU rRNA	C	2334	U	2335	G	2336	A	2337	C	2338	A	2339	C	2340	G	2341	cWW		ntSH
16	HL_8VTW_056	8VTW	0.5593	0	GNRA with extra cWW	1A	LSU rRNA	C	2355	C	2356	U	2357	G	2358	C	2359	A	2360	A	2361	G	2362	cWW	ncWW
17	HL_4WF9_053	4WF9	0.5610	0	GNRA with extra cWW	X	LSU rRNA	C	2382	C	2383	U	2384	A	2385	C	2386	A	2387	A	2388	G	2389	cWW	ncWW
18	HL_8KAL_001	8KAL	0.4950	0	GNRA with extra cWW	A	tracrRNA	U	31	A	32	G	33	A	34	A	35	A	36	U	37	A	38	ncWW
19	HL_3R9X_002	3R9X	0.6305	0	GNRA related	C	RNA301	G	1514	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	C	1521	ncWW			ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUAAUGGC	2
GAUAGUGGC	2
GGUAAGUUC	1
GGUAACGGC	1
GUUGACUAC	1
G(OMC)UCAUAAC	1
GGUAAGAGC	1
GUUCGAAUC	1
AUGAGAAUU	1
CCAAUAGG	1
GCUUCAAAC	1
UUGAAAAA	1
CUGACACG	1
CCUGCAAG	1
CCUACAAG	1
UAGAAAUA	1
GGGGAACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAAUGG	2
AUAGUGG	2
GUAAGUU	1
GUAACGG	1
UUGACUA	1
(OMC)UCAUAA	1
GUAAGAG	1
UUCGAAU	1
UGAGAAU	1
CAAUAG	1
CUUCAAA	1
UGAAAA	1
UGACAC	1
CUGCAA	1
CUACAA	1
AGAAAU	1
GGGAAC	1

Release history

Release	3.90
Date	2024-11-06
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA related (6)
GNRA with extra cWW (5)
(2)
T-loop related (2)
tRNA anticodon loop (2)
GNRA with near cWW (1)
GNRA with extra tWH (1)
Basepair signature: cWW-F-F-F-F-F-F
Heat map statistics: Min 0.07 | Avg 0.51 | Max 0.91

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.5272 s