HL_2KGP_006

3D structure

PDB id

2KGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for stabilization of the tau pre-mRNA splicing regulatory element by Novantrone (Mitoxantrone)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGUACCUU

Length

8 nucleotides

Bulged bases

2KGP|6|A|C|14, 2KGP|6|A|C|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2KGP_006 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2378

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2KGP|6|A|A|10
2KGP|6|A|G|11
2KGP|6|A|U|12
2KGP|6|A|A|13
2KGP|6|A|C|14
2KGP|6|A|C|15
2KGP|6|A|U|16
2KGP|6|A|U|17

Current chains

Chain A

RNA (25-MER)

Nearby chains