HL_2KPC_003

3D structure

PDB id

2KPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACAGUUU

Length

7 nucleotides

Bulged bases

2KPC|3|A|U|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2KPC_003 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3805

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

2KPC|3|A|A|6
2KPC|3|A|C|7
2KPC|3|A|A|8
2KPC|3|A|G|9
2KPC|3|A|U|10
2KPC|3|A|U|11
2KPC|3|A|U|12

Current chains

Chain A

RNA (5'-R(*UP*GP*AP*GP*CP*AP*CP*AP*GP*UP*UP*UP*GP*CP*UP*CP*A)-3')

Nearby chains