HL_2KRV_001

3D structure

PDB id

2KRV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the E. coli tRNA-Arg1 (ICG) ASL containing the 2-thiocytidine modification

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

G(RSP)UICGAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: RSP

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2KRV_001 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3908

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2KRV|1|A|G|5
2KRV|1|A|RSP|6
2KRV|1|A|U|7
2KRV|1|A|I|8
2KRV|1|A|C|9
2KRV|1|A|G|10
2KRV|1|A|A|11
2KRV|1|A|A|12
2KRV|1|A|C|13

Current chains

Chain A

RNA (5'-R(*CP*UP*CP*GP*GP*(RSP)P*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')

Nearby chains