HL_2L1F_002

3D structure

PDB id

2L1F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGACGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2L1F_002 not in the Motif Atlas

Geometric match to HL_5XTM_002

Geometric discrepancy: 0.38

The information below is about HL_5XTM_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

2L1F|1|A|A|362
2L1F|1|A|G|363
2L1F|1|A|A|364
2L1F|1|A|C|365
2L1F|1|A|G|366
2L1F|1|A|U|367

Current chains

Chain A

RNA (65-MER)

Nearby chains

Chain B

RNA (66-MER)