HL_2L1F_036

3D structure

PDB id

2L1F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGACGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2L1F_036 not in the Motif Atlas

Geometric match to HL_4V9F_045

Geometric discrepancy: 0.3998

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2L1F|9|B|A|762
2L1F|9|B|G|763
2L1F|9|B|A|764
2L1F|9|B|C|765
2L1F|9|B|G|766
2L1F|9|B|U|767

Current chains

Chain B

RNA (66-MER)

Nearby chains

Chain A

RNA (65-MER)