HL_2LA5_003
3D structure
- PDB id
- 2LA5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA Duplex-Quadruplex Junction Complex with FMRP RGG peptide
- Experimental method
- SOLUTION NMR
- Resolution
Loop
- Sequence
- UGUGGAAGGAGUGGCUGGGUUG
- Length
- 22 nucleotides
- Bulged bases
- 2LA5|3|A|U|10, 2LA5|3|A|A|13, 2LA5|3|A|U|19, 2LA5|3|A|C|22, 2LA5|3|A|U|23, 2LA5|3|A|U|27
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2LA5_003 not in the Motif Atlas
- Geometric match to HL_5DEA_002
- Geometric discrepancy: 0.2552
- The information below is about HL_5DEA_002
- Detailed Annotation
- G-quadruplex
- Broad Annotation
- No text annotation
- Motif group
- HL_60293.1
- Basepair signature
- cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F
- Number of instances in this motif group
- 2
Unit IDs
2LA5|3|A|U|8
2LA5|3|A|G|9
2LA5|3|A|U|10
2LA5|3|A|G|11
2LA5|3|A|G|12
2LA5|3|A|A|13
2LA5|3|A|A|14
2LA5|3|A|G|15
2LA5|3|A|G|16
2LA5|3|A|A|17
2LA5|3|A|G|18
2LA5|3|A|U|19
2LA5|3|A|G|20
2LA5|3|A|G|21
2LA5|3|A|C|22
2LA5|3|A|U|23
2LA5|3|A|G|24
2LA5|3|A|G|25
2LA5|3|A|G|26
2LA5|3|A|U|27
2LA5|3|A|U|28
2LA5|3|A|G|29
Current chains
- Chain A
- RNA (36-MER)
Nearby chains
- Chain B
- Fragile X mental retardation 1 protein
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