HL_2LA5_004

3D structure

PDB id

2LA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA Duplex-Quadruplex Junction Complex with FMRP RGG peptide

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGUGGAAGGAGUGGCUGGGUUG

Length

22 nucleotides

Bulged bases

2LA5|4|A|U|10, 2LA5|4|A|A|13, 2LA5|4|A|U|19, 2LA5|4|A|C|22, 2LA5|4|A|U|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2LA5_004 not in the Motif Atlas

Geometric match to HL_5DE8_001

Geometric discrepancy: 0.3864

The information below is about HL_5DE8_001

Detailed Annotation

G-quadruplex

Broad Annotation

No text annotation

Motif group

HL_60293.1

Basepair signature

cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F

Number of instances in this motif group

2

Unit IDs

2LA5|4|A|U|8
2LA5|4|A|G|9
2LA5|4|A|U|10
2LA5|4|A|G|11
2LA5|4|A|G|12
2LA5|4|A|A|13
2LA5|4|A|A|14
2LA5|4|A|G|15
2LA5|4|A|G|16
2LA5|4|A|A|17
2LA5|4|A|G|18
2LA5|4|A|U|19
2LA5|4|A|G|20
2LA5|4|A|G|21
2LA5|4|A|C|22
2LA5|4|A|U|23
2LA5|4|A|G|24
2LA5|4|A|G|25
2LA5|4|A|G|26
2LA5|4|A|U|27
2LA5|4|A|U|28
2LA5|4|A|G|29

Current chains

Chain A

RNA (36-MER)

Nearby chains

Chain B

Fragile X mental retardation 1 protein