HL_2LBR_013

3D structure

PDB id

2LBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation Effects of Base Modification on the Anticodon Stem-loop of Bacillus subtilis tRNATYR

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACUGUA(6IA)A(PSU)

Length

9 nucleotides

Bulged bases

2LBR|5|A|U|9

QA status

Modified nucleotides: 6IA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2LBR_013 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3473

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

2LBR|5|A|A|5
2LBR|5|A|C|6
2LBR|5|A|U|7
2LBR|5|A|G|8
2LBR|5|A|U|9
2LBR|5|A|A|10
2LBR|5|A|6IA|11
2LBR|5|A|A|12
2LBR|5|A|PSU|13

Current chains

Chain A

RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*(PSU)P*CP*CP*CP*C)-3')

Nearby chains